Search results for "Directed acyclic graph"

showing 10 items of 18 documents

The Metabolic Building Blocks of a Minimal Cell

2020

This article belongs to the Section Evolutionary Biology.

0301 basic medicineMinimal gene set machineryMetabolic networkBacterial genome sizeComputational biologyMetabolic networksBiologyGenomeGeneral Biochemistry Genetics and Molecular BiologyArticle03 medical and health sciences0302 clinical medicineminimal gene set machinerylcsh:QH301-705.5Nasuia deltocephalinicolaGeneral Immunology and Microbiologydirected acyclic graphsDirected acyclic graphDirected acyclic graphs030104 developmental biologylcsh:Biology (General)Essential geneminimal cellsMinimal cellsCore (graph theory)metabolic networksGraph (abstract data type)General Agricultural and Biological Sciences030217 neurology & neurosurgeryBiology
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An Analysis of the Influence of Noneffective Instructions in Linear Genetic Programming

2020

Abstract Linear Genetic Programming (LGP) represents programs as sequences of instructions and has a Directed Acyclic Graph (DAG) dataflow. The results of instructions are stored in registers that can be used as arguments by other instructions. Instructions that are disconnected from the main part of the program are called noneffective instructions, or structural introns. They also appear in other DAG-based GP approaches like Cartesian Genetic Programming (CGP). This article studies four hypotheses on the role of structural introns: noneffective instructions (1) serve as evolutionary memory, where evolved information is stored and later used in search, (2) preserve population diversity, (3)…

Computational MathematicsTheoretical computer scienceDataflowComputer scienceLinear genetic programmingPopulation diversitySymbolic regressionCartesian genetic programmingDirected acyclic graphBiological EvolutionAlgorithmsNeutral mutationEvolutionary Computation
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Detection, tracking and event localization of jet stream features in 4-D atmospheric data

2012

We introduce a novel algorithm for the efficient detection and tracking of features in spatiotemporal atmospheric data, as well as for the precise localization of the occurring genesis, lysis, merging and splitting events. The algorithm works on data given on a four-dimensional structured grid. Feature selection and clustering are based on adjustable local and global criteria, feature tracking is predominantly based on spatial overlaps of the feature's full volumes. The resulting 3-D features and the identified correspondences between features of consecutive time steps are represented as the nodes and edges of a directed acyclic graph, the event graph. Merging and splitting events appear in…

Computer scienceEvent (computing)lcsh:QE1-996.5Feature selectionGridcomputer.software_genreTracking (particle physics)Directed acyclic graphData segmentlcsh:GeologyFeature (computer vision)Data miningCluster analysiscomputerAlgorithmPhysics::Atmospheric and Oceanic Physics
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On Sturmian Graphs

2007

AbstractIn this paper we define Sturmian graphs and we prove that all of them have a certain “counting” property. We show deep connections between this counting property and two conjectures, by Moser and by Zaremba, on the continued fraction expansion of real numbers. These graphs turn out to be the underlying graphs of compact directed acyclic word graphs of central Sturmian words. In order to prove this result, we give a characterization of the maximal repeats of central Sturmian words. We show also that, in analogy with the case of Sturmian words, these graphs converge to infinite ones.

Discrete mathematicsApplied MathematicsCDAWGsContinued fractionsSturmian wordSturmian wordsCharacterization (mathematics)RepeatsDirected acyclic graphCombinatoricsIndifference graphSturmian words CDAWGs Continued fractions RepeatsChordal graphComputer Science::Discrete MathematicsDiscrete Mathematics and CombinatoricsContinued fractionWord (group theory)Computer Science::Formal Languages and Automata TheoryReal numberMathematics
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When can association graphs admit a causal interpretation?

1994

We discuss essentially linear structures which are adequately represented by association graphs called covariance graphs and concentration graphs. These do not explicitly indicate a process by which data could be generated in a stepwise fashion. Therefore, on their own, they do not suggest a causal interpretation. By contrast, each directed acyclic graph describes such a process and may offer a causal interpretation whenever this process is in agreement with substantive knowledge about causation among the variables under study. We derive conditions and procedures to decide for any given covariance graph or concentration graph whether all their pairwise independencies can be implied by some …

Discrete mathematicsComputer sciencePairwise comparisonCausationCovarianceDirected acyclic graphUndirected graphAlgorithmGraph
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Quantum algorithm for tree size estimation, with applications to backtracking and 2-player games

2017

We study quantum algorithms on search trees of unknown structure, in a model where the tree can be discovered by local exploration. That is, we are given the root of the tree and access to a black box which, given a vertex $v$, outputs the children of $v$. We construct a quantum algorithm which, given such access to a search tree of depth at most $n$, estimates the size of the tree $T$ within a factor of $1\pm \delta$ in $\tilde{O}(\sqrt{nT})$ steps. More generally, the same algorithm can be used to estimate size of directed acyclic graphs (DAGs) in a similar model. We then show two applications of this result: a) We show how to transform a classical backtracking search algorithm which exam…

FOS: Computer and information sciencesQuantum PhysicsSpeedupBacktrackingFOS: Physical sciences0102 computer and information sciences02 engineering and technologyComputational Complexity (cs.CC)Directed acyclic graph01 natural sciencesSearch treeCombinatoricsComputer Science - Computational Complexity010201 computation theory & mathematicsSearch algorithm020204 information systemsComputer Science - Data Structures and AlgorithmsTernary search tree0202 electrical engineering electronic engineering information engineeringData Structures and Algorithms (cs.DS)Quantum algorithmDepth-first searchQuantum Physics (quant-ph)MathematicsProceedings of the 49th Annual ACM SIGACT Symposium on Theory of Computing
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Bildungsexpansion, soziale Klasse und die Wahl von Latein als Strategie der Distinktion

2021

In times of educational expansion, privileged families are looking for new strategies of distinction. Referring to Pierre Bourdieu���s theory of distinction, we argue that choosing Latin at school ��� a language that is no longer spoken and therefore has no direct value ��� is one of the strategies of privileged families to set themselves apart from less privileged families. Based on two surveys we conducted at German schools, the paper analyzes the relationship between parents��� educational background and the probability that their child will learn Latin. Results indicate that historically academic families have the strongest tendency towards learning Latin, followed by new academic famil…

Fachgruppe SoziologieEducational ExpansionFremdspracheSociology and Political ScienceFremdsprachenunterrichtForeign language300 Sozialwissenschaften::300 Sozialwissenschaften Soziologie::301 Soziologie AnthropologieSocial classDirected Acyclic Graph (DAG)Sociology & anthropologyBourdieu P.Distinktionexpansion of educational systemAllgemeine Soziologie Makrosoziologie spezielle Theorien und Schulen Entwicklung und Geschichte der SoziologieForeign LanguageSociologyGeneral Sociology Basic Research General Concepts and History of Sociology Sociological TheoriesPositive economicsdistinctionBourdieuforeign language teachingDistinction301Latinforeign languageSociology of EducationSocial ClassSoziologie AnthropologieBildungs- und ErziehungssoziologieBildungsexpansionsoziale Klasseddc:301social class10200Die Wahl des schulischen Fremdsprachenprofils: Eine Form der horizontalen Differenzierung im Bildungssystem?; ZA5272: German General Social Survey - ALLBUS 2018 [Latein; Latin; Directed Acyclic Graph (DAG); ZA7568]
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Robust Conditional Independence maps of single-voxel Magnetic Resonance Spectra to elucidate associations between brain tumours and metabolites.

2020

The aim of the paper is two-fold. First, we show that structure finding with the PC algorithm can be inherently unstable and requires further operational constraints in order to consistently obtain models that are faithful to the data. We propose a methodology to stabilise the structure finding process, minimising both false positive and false negative error rates. This is demonstrated with synthetic data. Second, to apply the proposed structure finding methodology to a data set comprising single-voxel Magnetic Resonance Spectra of normal brain and three classes of brain tumours, to elucidate the associations between brain tumour types and a range of observed metabolites that are known to b…

False discovery rateB VitaminsMagnetic Resonance SpectroscopyComputer scienceDirected Acyclic GraphsBiochemistry030218 nuclear medicine & medical imaging0302 clinical medicineMetabolitesMedicine and Health SciencesAmino AcidsQANeurological Tumors0303 health sciencesMultidisciplinaryDirected GraphsOrganic CompoundsBrain NeoplasmsQRTotal Cell CountingBrainMutual informationVitaminsLipidsChemistryConditional independenceOncologyNeurologyPhysical SciencesEngineering and TechnologyMedicineMeningiomaAlgorithmManagement EngineeringAlgorithmsResearch ArticleComputer and Information SciencesScienceCell Enumeration TechniquesGlycineFeature selectionCholinesResearch and Analysis MethodsSynthetic data03 medical and health sciencesInsuranceRobustness (computer science)HumansMetabolomics030304 developmental biologyRisk ManagementOrganic ChemistryChemical CompoundsBayesian networkBiology and Life SciencesCancers and NeoplasmsProteinsBayes TheoremDirected acyclic graphR1MetabolismAliphatic Amino AcidsGraph TheoryMathematicsPLoS ONE
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Vertical Representation of C∞-words

2015

International audience; We present a new framework for dealing with C∞-words, based on their left and right frontiers. Thisallows us to give a compact representation of them, and to describe the set of C∞-words throughan infinite directed acyclic graph G. This graph is defined by a map acting on the frontiers ofC∞-words. We show that this map can be defined recursively and with no explicit reference toC∞-words. We then show that some important conjectures on C∞-words follow from analogousstatements on the structure of the graph G.

Kolakoski wordC∞-wordsComputer Science (all)[MATH.MATH-CO]Mathematics [math]/Combinatorics [math.CO]directed acyclic graphComputer Science::Computation and Language (Computational Linguistics and Natural Language and Speech Processing)directed setrecursive function[INFO.INFO-DM]Computer Science [cs]/Discrete Mathematics [cs.DM]Computer Science::Formal Languages and Automata Theory[INFO.INFO-CL]Computer Science [cs]/Computation and Language [cs.CL]C∞-wordTheoretical Computer Science
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Vertical representation of C∞-words

2015

We present a new framework for dealing with C ∞ -words, based on their left and right frontiers. This allows us to give a compact representation of them, and to describe the set of C ∞ -words through an infinite directed acyclic graph G. This graph is defined by a map acting on the frontiers of C ∞ -words. We show that this map can be defined recursively and with no explicit reference to C ∞ -words. We then show that some important conjectures on C ∞ -words follow from analogous statements on the structure of the graph G.

Left and rightDiscrete mathematicsGeneral Computer ScienceComputer Science::Computation and Language (Computational Linguistics and Natural Language and Speech Processing)16. Peace & justiceDirected acyclic graphTheoretical Computer ScienceCombinatoricsDirected setRecursive functionsGraph (abstract data type)Null graphComputer Science::Formal Languages and Automata TheoryMathematicsofComputing_DISCRETEMATHEMATICSMathematicsTheoretical Computer Science
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